Gene Search
Annotations · GO terms · domains · variants · orthologs
Species
4
solanaceae crops
Total Genes
255,874
annotated
Variants
✓
SNP / InDel indexed
Orthologs
4
4 solanaceae species
🧬 What you get per gene
| 📍 | Annotation | Chromosome location · strand · functional description · version mapping | |
| 🧬 | Gene Structure | Exon / intron layout from GFF3 | |
| 🏷️ | GO Terms | Biological Process · Molecular Function · Cellular Component | |
| ⚛️ | Pfam Domains | Protein domain architecture diagram + InterPro cross-links | |
| 🔁 | Natural Variants | SNP / InDel with consequence classification (synonymous / missense / nonsense) | tomato focused |
| 🌐 | Plant Orthologs | Best-hit matrix across 5 solanaceae species | |
| 📝 | Sequences | CDS nucleotide + protein amino acid sequence with length stats |
🤖 What Gene Chat can tell you
- Natural-language summary of gene function based on annotation + GO + Pfam
- Conservation hints from ortholog distribution (which species have homologs, identity range)
- Variant impact overview (e.g. "3 nonsense mutations in CDS") — tomato reference, 5 species compared
💡 Try these Gene IDs:
Solyc01g005630.3 (tomato) · Soltu.DM.09G026840 (potato) · Niben261Chr01g0004012 (Tobacco)