Protein Structure
AlphaFold predictions · pLDDT confidence · functional binding sites
🔬 Protein structure coverage
| Species | AlphaFold PDBs | Binding site annotation | Status |
|---|---|---|---|
| tomato | 25,548 | — | ✅ Ready |
| Potato / Tobacco / Pepper | — | — | ⏳ Coming Soon |
🔬 What you get per protein
| 🧬 | 3D Structure | Interactive AlphaFold prediction rendered with MolStar (rotate / zoom / residue-level) |
| 🎯 | pLDDT Confidence | Per-residue confidence score: Excellent (>90) / Good (70-90) / Fair (50-70) / Low (<50) |
| 🔗 | Binding Sites (GPSite) | AI-predicted functional sites: DNA / RNA / Peptide / Protein / ATP / HEM / ZN / CA / MG / MN |
| ⚗️ | Residue Annotations | Per-residue amino acid + site type + confidence score (tomato) |
| 💾 | PDB Download | Full PDB file download for offline analysis (PyMOL / ChimeraX / Rosetta) |
🧬 What Protein Chat can tell you
- Structural quality interpretation based on pLDDT score (fold reliability)
- Functional hints from predicted binding sites (e.g. likely DNA-binding protein)
- One practical experimental suggestion (e.g. suitable for docking study)
💡 Try these Gene IDs:
Solyc01g005630.3 (tomato) · Soltu.DM.09G026840 (potato) · Niben261Chr01g0004012 (Tobacco)